7 Best Accounting Software for eBay Sellers 2024 (Ranked)

by Chris Von Wilpert, BBusMan • Last updated November 23, 2023

Expert Verified by Leandro Langeani, BBA

First-Person Perspective: We buy, test and review software products based on a 3-step rating methodology and first-hand experienceIf you buy through our links, we may get a commission. Read our rating methodology and how we make money.

Today there are 96 different accounting software for eBay sellers. We spent 67 hours comparing the top 50 to find the seven best you can use to keep books for your eBay store.

What is the Best Accounting Software for eBay Sellers?

  1. QuickBooks Online — best of the best
  2. FreshBooks — best for small businesses 
  3. Zoho Inventory — best for inventory management
  4. Wave Accounting — best free alternative
  5. Xero — best for midsize businesses
  6. FreeAgent — best for international sellers
  7. Easy Auctions Tracker — best for auction sellers

Our Verdict — Best Of The Best

Price:  Starts at $15/month

QuickBooks Online is an innovative accounting solution that helps eBay sellers manage their finances. We think it’s the best because of its seamless eBay integration, easy-to-use interface, and multi-channel sales support.

The Best Part:

  • Multi-channel integration. QuickBooks easily connects with various sales channels such as eBay, Amazon, and Shopify, creating an integrated overview of all your sales.

The Worst Part:

  • Limited features on cheaper plans. The Simple Start plan ($15/mo) lacks features that can be essential to eBay sellers.

Get it if you want a powerful accounting management solution for your eBay business.

I recommend you sign up for the Plus plan at $42.50/month.

(30-day free trial)

Best For

QuickBooks Online is best for eBay sellers who need a feature-rich accounting solution to manage income and expenses, calculate taxes, and forecast profits.

Top Features

  • Real-time financial synchronization. Sync your eBay sales and transactions instantly and get accurate, real-time financial overview, 24/7.
  • Quarterly tax estimates. Use QuickBooks to calculate, make, and record your estimated federal tax payments, keeping Uncle Sam happy.
  • Receipt scanning. Snap quick photos of your receipts and store them in QuickBooks for easy expense tracking and tax filing.
  • Workflow automation. Connect your eBay business processes with QuickBooks’ powerful workflow automation tools, streamlining your CRM, project management, social media marketing, and more.
  • Accurate mileage tracking. Monitor your business-related trips with precision and claim your tax deductions via QuickBooks.

Pricing

QuickBooks Online offers four pricing plans:

  • Simple Start: $15/month for the first year, then $30/month for eBay sellers looking for a basic accounting solution with features for tracking expenses, income, and tax, for a single eBay store.
  • Essentials: $27.50/month for the first year, then $55/month for eBay sellers looking for a complete accounting solution with billing tools, for up to three online stores (for Amazon, Shopify, and eBay).
  • Plus: $42.50/month for the first year, then $85/month for eBay sellers looking for a robust accounting solution with inventory management tools, for unlimited online stores.
  • Advanced: $100/month for the first year, then $200/month for eBay sellers looking for an advanced accounting solution with the whole package, with batch invoicing, workflow automation, and a dedicated QuickBooks rep, for unlimited online stores.

Try QuickBooks Online today with a free 30-day trial.

Our Verdict — Best For Small Businesses

Price: Starts at $6.80/month

FreshBooks is a user-friendly accounting solution with the perfect features for small eBay businesses. We think it’s the best for small businesses because of its team collaboration tools, robust financial reporting, and customizable invoicing.

The Best Part:

  • Effortless invoicing. FreshBooks offers customizable professional invoicing to help you combine multiple purchases into one invoice, collect payment from buyers who didn’t check out, or add items to a buyer’s completed order.

The Worst Part:

  • Unusable on lower-tier plans. FreshBooks restricts the number of billable customers for Lite (five customers) and Plus (50 customers) plans. Unlimited customers are only available for Premium and Select plans, starting at  $22/mo.

Get it if you want a user-friendly accounting solution to streamline invoicing, expense tracking, and financial reporting for your eBay stores.

I recommend you get started with the 30-day free trial, then get the Premium plan for $22/month.

(30-day free trial)

Best For

FreshBooks is best for small businesses that need an easy-to-use accounting solution to simplify their eBay stores’ bookkeeping.

Top Features

  • Automated invoicing and billing. Create professional invoices, set up recurring billing, and send automated payment reminders to customers.
  • Intuitive user interface. Manage your eBay store’s finances easily with FreshBooks’ user-friendly desktop and mobile apps, even if you’ve got zero experience with accounting software.
  • Accountant access. Collaborate with your accountant by inviting them to your FreshBooks account with their own login
  • In-depth financial reporting. Generate reports on expenses, income, and other financial metrics for your eBay store, and make smarter decisions.
  • Automated expense tracking. Import expenses from your bank accounts and let FreshBooks take care of your expenses.

Pricing

FreshBooks offers four pricing plans:

  • Lite: $6.80/month for the first six months, then $17/month for startup eBay businesses with less than five eBay customers.
  • Plus: $12/month for the first six months, then $30/month for established eBay sellers who need to set up expense tracking, recurring billing, and double-entry accounting, for up to 50 eBay customers.
  • Premium: $22/month for the first six months, then $55/month for small eBay businesses that need a robust accounting tool to manage all financial aspects of their eBay stores, for unlimited customers.
  • Select: Custom pricing, for small eBay businesses looking for a white-label accounting solution with a dedicated account manager, for unlimited customers.

Annual plans provide a 10% discount.

Try FreshBooks today with a free 30-day trial.

Our Verdict — Best For Inventory Management

Price: Starts at $79/month

Zoho Inventory is a straightforward inventory management solution for eBay sellers. We think it’s the best for inventory management because of its end-to-end tracking capabilities, integration with multiple shipping providers, and automated order processing.

The Best Part:

  • End-to-end tracking capabilities. Zoho Inventory allows you to track every item in your inventory for full control over stock.

The Worst Part:

  • Restrictions on warehousing. Standard Zoho plans have limits to the number of warehouses and orders you can manage, which could be a dealbreaker for some sellers.

Get it if you need a great, straightforward inventory management tool for your eBay business.

I recommend you start with the 14-day free trial, then get the Standard plan for $79/month.

(14-day free trial)

Best For

Zoho Inventory is best for eBay sellers who need a straightforward solution to connect inventory and finances.

Top Features

  • Integration with Zoho Books. Integrate Zoho Inventory with Zoho Books — Zoho’s native accounting platform — to manage your taxes, banking, and accounting processes in sync with your eBay inventory.
  • Serialized inventory. Know what’s coming and moving out of your warehouses by linking serial numbers to sales orders that roll in from eBay.
  • Efficient purchase order management. Get a heads-up when it’s time to reorder products from your suppliers to avoid running out of stock.
  • Efficient fulfillment and tracking. Keep eBay orders and inventory levels in sync by marking orders for drop shipping or even backordering scarce items during busy seasons.
  • Automated order processing. Set up Zoho Inventory to handle eBay orders for you, then track your shipments in real-time using AfterShip.

Pricing

Zoho Inventory offers six pricing plans:

  • Free: Free forever, for eBay sellers who need basic inventory management in multiple currencies for up to 50 orders per month, two warehouses, and two users.
  • Standard: $79/month for established eBay businesses that need a straightforward inventory management platform to support up to 1,500 monthly orders, two warehouses, and three users.
  • Professional: $129/month for growing eBay businesses that need an advanced inventory management system for serial number tracking, batch tracking, and order automation for up to 7,500 monthly orders, five users, and five warehouses.
  • Premium: $199/month for growing eBay businesses that need a comprehensive inventory management solution with advanced automation workflows, for up to 15,000 monthly orders, seven warehouses, and 10 users
  • Elite: $299/month for small and midsize businesses that need a robust inventory management solution with advanced features for international orders, for up to 25,000 monthly orders, 15 warehouses, and 15 users.
  • Ultimate: $399/month for midsize businesses that need the ultimate inventory management system with Zoho Analytics’ business intelligence reporting.

Annual plans provide a 25% discount.

Try Zoho Inventory today with a free 14-day trial.

Our Top Three Picks

Here’s a quick summary of our top three picks:

  1. QuickBooks Online — best of the best
  2. FreshBooks — best for small businesses 
  3. Zoho Inventory — best for inventory management

Here’s a quick comparison of our top seven picks:

Tool

Entry Offer

Pricing

QuickBooks Online

30-day free trial

Starts at $15/mo

FreshBooks

30-day free trial

Starts at $6.80/mo

Zoho Inventory

14-day free trial

Starts at $79/mo

Wave Accounting

None

Free forever

Xero

30-day free trial

Starts at $25/mo

FreeAgent

30-day free trial

Starts at $10/mo

Easy Auctions Tracker

None

$29.99

Here are the top 50 accounting software for eBay sellers we considered in this review:

  1. QuickBooks Online
  2. FreshBooks
  3. Zoho Inventory
  4. Wave Accounting
  5. Xero
  6. FreeAgent
  7. Easy Auctions Tracker
  8. GoDaddy Bookkeeping
  9. Zoho Books
  10. Kashoo
  11. WorkingPoint
  12. Webgility
  13. 10 Minute Accounts
  14. PawnSnap
  15. Sage Business Cloud Accounting
  16. CircleHub
  17. Sellbrite
  18. A2X
  19. Akounto
  20. OneUp
  21. AccountMate
  22. Microsoft Dynamics GP
  23. taxomate
  24. Crunch
  25. eAccounts Ltd
  26. LinkMyBooks
  27. Osome
  28. EcomBalance
  29. Microsoft Excel
  30. Google Sheets
  31. Sellerboard
  32. Profits by Helium 10
  33. Shopkeeper
  34. TaxJar
  35. FreeAgent
  36. MyCostPro
  37. ConnectBooks
  38. AccountEdge
  39. Billy
  40. Moneydance
  41. LessAccounting
  42. Invoicera
  43. GnuCash
  44. Manager.io
  45. QuickFile
  46. Quicken
  47. Reckon One
  48. Shoeboxed
  49. SimplyCost
  50. ZipBooks

Can you use QuickBooks for eBay?

Yes, QuickBooks is an excellent option for eBay sellers as it offers direct integration with popular ecommerce platforms, including eBay. This cloud-based accounting software helps manage financial records, inventory tracking, and sales tax management, providing a comprehensive accounting solution for eBay sellers.

How do I record eBay sales in QuickBooks?

To record eBay sales in QuickBooks, you'll need to connect your eBay account to QuickBooks. Once connected, your sales data, business expenses, and customer payments will automatically sync. 

QuickBooks simplifies the accounting process, generating professional invoices and providing customizable financial reports, including sales reports and loss statements.

How do I keep track of sales on eBay for taxes?

Using a cloud-based accounting software solution like QuickBooks or Zoho Books simplifies tracking sales for taxes. 

These programs offer sales tax management features, automatically calculating and categorizing taxes on your eBay transactions. The software generates tax documents and financial reports, ensuring accurate tax filings.

What is the app that tracks eBay profits?

GoDaddy Online Bookkeeping is a great tool for tracking eBay profits. It offers direct integration with eBay, providing real-time sales data and expense tracking. The mobile accounting app generates customizable reports, such as sales and expense reports, offering insights into your profits and cash flow.

Is Xero good for eBay sellers?

Xero is a powerful cloud-based accounting software option for eBay sellers, offering third-party ecommerce app integration with platforms like eBay. 

Xero simplifies accounting tasks, including invoice generation, inventory management, and time tracking. It provides a user-friendly interface and financial reports, ensuring efficient management of sales data and business expenses at an affordable price. 

It's our #5 pick as it's more suitable for larger eBay and e-commerce sellers.

The Bottom Line

To recap, here are the best accounting software for eBay sellers to try this year:

  1. QuickBooks Online — best of the best
  2. FreshBooks — best for small businesses 
  3. Zoho Inventory — best for inventory management
  4. Wave Accounting — free alternative
  5. Xero — best for midsize businesses
  6. FreeAgent — best for international sellers
  7. Easy Auctions Tracker — best for auction sellers

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