7 Best Accounting Software for Amazon Sellers 2024 (Rated)

by Chris Von Wilpert, BBusMan • Last updated November 23, 2023

Expert Verified by Leandro Langeani, BBA

First-Person Perspective: We buy, test and review software products based on a 3-step rating methodology and first-hand experienceIf you buy through our links, we may get a commission. Read our rating methodology and how we make money.

Today there are 83 different accounting software for Amazon sellers. We spent 76 hours comparing the top 50 to find the seven best you can use to manage accounting and finances for your Amazon store.

What is the Best Accounting Software for Amazon Sellers?

  1. Synder — best of the best
  2. Taxomate — best for multiple stores
  3. Link My Books — best for small businesses
  4. Zoho Books — best for automation
  5. TaxJar — best for reporting
  6. Wave Financial — best free option
  7. A2X — best for inventory management

Our Verdict — Best Of The Best

Price: Starts at $13/month

Synder is an innovative accounting solution with powerful dedicated features for Amazon sellers. We think it’s the best because of its robust integrations, user-friendly interface, and error-free reconciliation.

The Best Part:

  • Easy Amazon integration. Synder connects effortlessly with your Amazon account and automatically syncs your Amazon FBA, fulfillment, and sales data.

The Worst Part:

  • Limited transactions on low-tier plans. The Starter and Small plans can be quite restrictive for Amazon sellers getting more than 50-100 monthly sales.

Get it if you want the most user-friendly accounting solution to streamline your Amazon bookkeeping.

I recommend you start with the 15-day free trial, then sign up for the Scale plan at $99/month.

(15-day free trial)

Best For

Synder is best for Amazon sellers who need an easy-to-use accounting solution to streamline bookkeeping, manage taxes, and track inventory.

Top Features

  • Robust integrations. Sync your Amazon sales and data seamlessly to your favorite accounting tool, (e.g. QuickBooks, Synder Books, and Xero).
  • Real-time inventory tracking. Stay stocked up on hot-selling items with Synder’s real-time inventory tracking.
  • Smart rules. Sort your Amazon sales automatically with Synder’s if-then smart automation rules.
  • Tax withheld management. Keep track of your taxes for each sale to better understand profit margins and cash flow.
  • Multi-currency support. Manage your global Amazon accounts and marketplaces with Synder’s currency conversions and transaction syncing.

Pricing

Synder offers five pricing plans:

  • Starter: $13/month for Amazon sellers who need a basic accounting solution with reporting, tax tracking, and smart rules, for up to 50 monthly Amazon sales.
  • Small: $28/month for Amazon sellers who need a basic accounting solution with two e-commerce or accounting integrations instead of just one, and up to 100 monthly Amazon sales.
  • Medium: $55/month for Amazon sellers who need a complete accounting solution for their marketplace with multi-currency support and basic inventory tracking, for up to 500 monthly Amazon sales.
  • Scale: $99/month for Amazon sellers who need a robust accounting solution for their marketplace with advanced inventory tracking, product mapping, and advanced reporting, for up to 5,000 monthly Amazon sales.
  • Large: $249/month for Amazon sellers who need a full-fledged accounting solution with product bundling and done-for-you onboarding from Synder, for 10,000+ monthly Amazon sales.

Annual plans provide a 20% discount.

Try Synder today with a free 15-day trial.

Our Verdict — Best For Multiple Stores

Price: Starts at $14/month

Taxomate is an incredible accounting solution that connects Amazon stores with accounting tools like QuickBooks. We think it’s the best for multiple stores because of its unlimited stores plan, great native integrations, and one-on-one onboarding support.

The Best Part:

  • Seamless accounting integrations. Taxomate connects your Amazon stores seamlessly with Wave, Xero, and QuickBooks Online accounts.

The Worst Part:

  • No built-in accounting. Unlike Synder, Taxomate doesn’t have an integrated accounting solution. It requires you to connect a third-party accounting solution to manage finances for your Amazon stores.

Get it if you want a one-stop shop to connect your Amazon stores with your accounting software.

I recommend you start with the 14-day free trial, then go for the Multi-channel plan for $27/month.

(14-day free trial)

Best For

Taxomate is best for Amazon sellers who need to manage their books for multiple stores.

Top Features

  • Multi-channel sales support. Connect your Amazon, eBay, and Shopify stores seamlessly to your accounting software using Taxomate.
  • Instant order syncing. Taxomate syncs your Amazon transactions with your accounting tool, as soon as a new sale comes in.
  • In-depth COGS tracking. Use Taxomate’s “Cost of Goods Sold” tracking to monitor your expenses, optimize your pricing strategies, and maximize your profits.
  • One-on-one onboarding. Hit the ground running with Taxomate’s onboarding support — available on every plan.
  • Unlimited Amazon stores. Sync as many US or international stores you need with Taxomate’s Multi-channel plan.

Pricing

Taxomate offers two pricing plans:

  • Starter: $14/month for Amazon sellers who need a versatile accounting solution to connect accounting software with one Amazon account, for up to 200 monthly Amazon orders or more (extra fees apply).
  • Multi-channel: $27/month for Amazon sellers who need a versatile accounting solution to connect accounting software with unlimited Amazon, eBay, and Shopify accounts, for up to 200 monthly Amazon orders or more(extra fees apply).

Annual plans provide a 17% discount.

Try Taxomate today with a free 14-day trial.

Our Verdict — Best For Small Businesses

Price: Starts at $17/month

Link My Books is an easy-to-use solution for syncing sales from Amazon marketplaces to your accounting tools. We think it’s the best for small businesses because of its top-notch customer support, easy set up process, and seamless integrations.

The Best Part:

  • Unlimited Amazon marketplaces. Link My Books sets no limits on how many Amazon stores you can connect to your account.

The Worst Part:

  • It’s restrictive for large businesses. Link My Books’ pricing is tailored for smaller businesses. Larger companies with many Amazon accounts or international marketplaces may find the 10 sales channel limit a bit low. 

Get it if you want a hassle-free Amazon accounting solution to stay on top of your store’s finances.

I recommend you start with the 14-day free trial, then sign up for the Lite plan at $17/month.

(14-day free trial)

Best For

Link My Books is best for small Amazon businesses that need to integrate multiple Amazon stores to their accounting software, without breaking the bank.

Top Features

  • Unlimited merchant IDs. Connect unlimited merchant IDs even if you’re on the lowest tier, $17/month Lite plan.
  • No more overpaying taxes. Get accurate figures for your VAT, GST or sales taxes, for every order that comes through Link My Books.
  • It works with the giants. Link My Books does a great job at syncing to the most famous accounting software out there: QuickBooks Online and Xero accounts.
  • Multi-channel support. Enjoy native integrations with all of your online store platforms, like Shopify, eBay, and Etsy, on top of Amazon.
  • Stellar customer support. Link My Books’ team of experts provides excellent support, with a deep knowledge of ecom accounting.

Pricing

Link My Books offers three pricing plans:

  • Lite: $17/month for small Amazon businesses and sellers who need to sync one Amazon account with their QuickBooks or Xero accounts.
  • Pro: $29/month for small Amazon businesses and sellers who need to sync up to five Amazon accounts with their QuickBooks or Xero accounts.
  • Premium: $56/month for small Amazon businesses and sellers who need to sync up to 10 Amazon accounts with their QuickBooks or Xero accounts.

Annual plans provide a 17% discount.

Try Link My Books today with a free 14-day trial.

Our Top Three Picks

Here’s a quick summary of our top three picks:

  1. Synder — best of the best
  2. Taxomate — best for multiple stores
  3. Link My Books — best for small businesses

Here’s a quick comparison of our top seven picks:

Tool

Entry Offer

Pricing

Synder

15-day free trial

Starts at $13/mo

Taxomate

14-day free trial

Starts at $14/mo

Link My Books

14-day free trial

Starts at $17/mo

Zoho Books

14-day free trial

Starts at $20/mo

TaxJar

30-day free trial

Starts at $19/mo

Wave Financial

None

Free forever

A2X

Free plan

Starts at $19/mo

Here are the top 50 accounting software for Amazon sellers we considered in this review:

  1. Synder
  2. Taxomate
  3. Link My Books
  4. Zoho Books
  5. TaxJar
  6. Wave Financial
  7. A2X
  8. QuickBooks Online
  9. FreshBooks
  10. Xero
  11. Sage 50cloud
  12. Finaloop
  13. AccountEdge Pro
  14. Fetcher
  15. AccountingSuite
  16. Cougar Mountain Software
  17. Kashoo
  18. Bench.co
  19. Sellerboard
  20. FreeAgent
  21. Gresham
  22. Datarails
  23. Redwood
  24. Stripe 
  25. DataServ SaaS AP Automation
  26. Gravity Software
  27. Chargebee
  28. NCH Software
  29. EASYGST
  30. Firmway
  31. EcomBalance
  32. Microsoft Excel
  33. enReconcile
  34. Recosso
  35. Google Sheets
  36. Invoicera
  37. Profits by Helium 10
  38. MyCostPro
  39. Cashbook
  40. Shopkeeper
  41. ConnectBooks
  42. GnuCash
  43. Moneydance
  44. Billy
  45. LessAccounting
  46. Sellerboard
  47. Adra Accounts
  48. Lendio
  49. NetSuite
  50. Upflow

Does Amazon offer bookkeeping services?

Amazon does not directly offer bookkeeping services; however, there are various accounting software solutions and third-party tools that cater to Amazon sellers. 

For instance, Synder, Taxomate, and Link My Books are our top picks that can streamline accounting tasks and generate financial reports for Amazon sellers. These tools often integrate with other accounting software like QuickBooks Online, Wave Accounting, or Xero, and help maintain accurate accounting records.

Furthermore, these tools can track business expenses, inventory levels, and even calculate applicable sales tax rates, easing the burden for sellers without an accounting background.

How do I enter Amazon FBA into QuickBooks?

To enter Amazon FBA into QuickBooks, sellers can use third-party software like Synder, Taxomate, or Link My Books. These tools integrate with QuickBooks Online, Amazon Seller Central, and other accounting programs, allowing seamless data synchronization between platforms.

They automate the process of recording Amazon FBA business transactions, sales, inventory levels, and expenses, which helps sellers maintain accurate accounting records and generate financial reports. 

These tools also provide additional features such as sales tax calculations, expense tracking, and custom reports, allowing sellers to focus on growing their business.

Why is bookkeeping important for Amazon sellers?

Bookkeeping is crucial for Amazon sellers because it helps them maintain accurate accounting records, track business expenses, monitor inventory levels, and assess their financial performance. 

Proper bookkeeping enables sellers to generate financial reports, such as balance sheets and profit and loss reports, which are essential for making informed business decisions.

Furthermore, well-maintained accounting records facilitate tax compliance, as they allow sellers to accurately calculate and report sales tax, Federal and State Returns, and other applicable taxes. 

With tools like QuickBooks Online Plus, Wave Accounting, or Xero, Amazon sellers can efficiently manage their accounting tasks and focus on growing their business.

Does Amazon collect and pay tax for FBA sellers?

Amazon collects sales tax on behalf of FBA sellers for orders shipped to customers in certain states. Through its Marketplace Tax Collection (MTC) program, Amazon calculates, collects, and remits applicable sales tax for these transactions, simplifying the sales tax return process for sellers.

However, it is still the responsibility of the seller to ensure compliance with all other tax obligations, such as income tax and filing Federal and State Tax Returns. Sellers should consult with a tax professional to ensure they meet their tax obligations.

How much is the A2X app?

The A2X app is a popular accounting solution for Amazon sellers, designed to automate financial tasks and provide accurate accounting records. The starting price for A2X is $19 per month, which includes features such as seamless integration with Amazon Seller Central, QuickBooks Online, and Xero, as well as support for both cash basis and accrual accounting methods.

The app offers a wide range of plans with varying features, such as additional user access, increased order volume, and support for multiple marketplaces, catering to different business needs and budgets.

Can I give my accountant access to my Amazon?

Yes, you can give your accountant access to your Amazon Seller Central account by granting them user permissions. To do this, follow these steps:

  1. Log in to your Amazon Seller Central account.
  2. Navigate to the "Settings" menu in the top right corner and select "User Permissions."
  3. Click on "Add a New Seller Central User" and enter your accountant's name and email address. Click "Next" to proceed.
  4. You will now see a list of permissions. Grant your accountant the appropriate permissions based on their role and the tasks they need to perform. For example, you may want to give them access to financial reports, tax documentation, and other accounting-related information.
  5. After selecting the necessary permissions, click "Send Invitation." Your accountant will receive an email invitation to access your Amazon Seller Central account with the granted permissions.

In addition to providing your accountant with access to your Amazon Seller Central account, you can also add them to third-party tools like Synder, Taxomate, and Link My Books, which facilitate integration between Amazon and accounting software such as QuickBooks and Xero.

Granting your accountant access to these tools can further streamline the accounting process and ensure that they have all the necessary information to manage your financial data accurately and efficiently.

The Bottom Line

To recap, here are the best accounting software for Amazon sellers to try this year:

  1. Synder — best of the best
  2. Taxomate — best for multiple stores
  3. Link My Books — best for small businesses
  4. Zoho Books — best for automation
  5. TaxJar — best for reporting
  6. Wave Financial — best free option
  7. A2X — best for inventory management

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